rs6380867 SNP Detail

Summary

• ID
  rs6380867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174500658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCATCAA ATTTTGCCAA
  GGTTAAACCA CTGGTATTCA GCTGTTCTCT CTGTTGCTTT CTTCCTGTGT TCAAACATTG
  TGCACCTTGG CTCTTTGTGT CCCAGTTTCC ATAATGGCCT TTCTTTATTC TTAAAGCTTT
  TTGCTTTTCC TCAAATCGGT TGACCTTCTA ACACCCCCAA ACCAAGGCTG TGGGTTGTTT
  Y
  TTCTGCCAAC TCCCATCTGC CTGTCTTTGA ATACCTCTAG TGGAGGCTTC CTCTCTTCTC
  TTCACTTTTC AGCACCAGGA TTCTCTTTTC ATTTCTCTTT AAGATTTTCT GTTTCTTTAT
  TGGTGCTGTC ATTTTGACTG CACATCAATT TTTTTCCATC TCTTTCTTTG AGATGTTTAA
  AAATTCTTTT CATACACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8787022	WI_WGS_1_175985726	WI	MOUSE	f	SNP		C	T
ss146292444	ENSMUSSNP6701386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320143626	CHEV_1_176603223	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6380867					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174500658 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1659 bp proximal
Rr423786	regulatory region 423786	1732 bp proximal