rs6380572 SNP Detail

Summary

• ID
  rs6380572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137047299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGGGTG AGCTGCTAGG
  CTCAGTTGAT CCTCGGGGGC TTCTCTGATG AGTTGCTGCT TGATTGGCTG AACAGGGTAC
  ACAGAGTTAA GTTTGAAAGA GGCGGAGGAG GCAGTGCCAC AAGTAGAGAG TTCGTTTCCA
  CTGAAGGGAA ATGTTTGCTG GTGTGAGGGC CTGAAAGTGT GTTAAATGGA TTCGGAGAAC
  R
  TCTCAGGAAA TGTGTTAACT TTTTAGGGAC TAAAAATAGA ATTTTGACTT AAAATGTGCT
  AGTTTAAAAC AACGACAAAC AAACAAAATT ATGGTCTTTT CCGTCATCGG CCCAGAATAA
  TAGTGGATGG GGTAAGAGTG AAAGTCCATC ACTGGAAACA GTGCTACCAA AGTCTCCAAC
  AGTACAGCTC TCTTTCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786726	WI_WGS_3_137837523	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380572					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137047299 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	Intron
Rr585936	regulatory region 585936	385 bp distal
Tssr31897	transcription start site region 31897	492 bp downstream
Tssr31898	transcription start site region 31898	443 bp downstream
Tssr31899	transcription start site region 31899	392 bp downstream
Tssr31900	transcription start site region 31900	384 bp downstream
Tssr31901	transcription start site region 31901	348 bp downstream
Tssr31902	transcription start site region 31902	315 bp downstream