rs6380437 SNP Detail

Summary

• ID
  rs6380437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106642884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCATGC GCTTTCTTGC
  CCACAAATCA GAGGGTCCAC TCCCTTCTGC AAACCCTTCT CCTATCCAGT CCTTCATCTC
  CCACCCTCTG CCTCTATGCC TCACTGCCGG CCTGGCCTAC TGCATTAGAC TGTTTGCCAC
  TGCCCACCCC CCAAACCCCC CAACCTTTAC CCCCCCCCCC AGTCACCAGA AGGCCTAGAG
  R
  GCAACTAGAA TGTTTTGATC ACAAGCCGTC TAGCCCCAGT GTGATCTTAC CCTCCATGTG
  CCACACCCAG CCCCAAACCC CCAGTGACAT GCATTGATCC CTCCATGCTG AGCCCTCACA
  CTGAGGTCGG GGCTGCCACT CAGGGGGCTG TGAAGGAAAG ACCTGGCTTC TCCCCATCAG
  AACCCTTCAC ACCCTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786591	WI_WGS_4_104502513	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380437					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106642884 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1855 bp proximal
Rr596810	regulatory region 596810	1866 bp proximal