rs6380084 SNP Detail

Summary

• ID
  rs6380084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137047237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTCTCTGA TGAGTTGCTG CTTGATTGGC TGAACAGGGT
  ACACAGAGTT AAGTTTGAAA GAGGCGGAGG AGGCAGTGCC ACAAGTAGAG AGTTCGTTTC
  Y
  ACTGAAGGGA AATGTTTGCT GGTGTGAGGG CCTGAAAGTG TGTTAAATGG ATTCGGAGAA
  CGTCTCAGGA AATGTGTTAA CTTTTTAGGG ACTAAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss8786237	WI_WGS_3_137837461	WI	MOUSE	f	SNP						C	T
ss46990373	NES10869279	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C			T	C		C
ss320975394	CHEV_3_137004440	CHEVERUD	SCREENING_POP	f	SNP										C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs6380084					SNP	C	C	C	C	C	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990373	NES10869279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137047237 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	Intron
Rr585936	regulatory region 585936	323 bp distal
Tssr31897	transcription start site region 31897	430 bp downstream
Tssr31898	transcription start site region 31898	381 bp downstream
Tssr31899	transcription start site region 31899	330 bp downstream
Tssr31900	transcription start site region 31900	322 bp downstream
Tssr31901	transcription start site region 31901	286 bp downstream
Tssr31902	transcription start site region 31902	253 bp downstream