rs6380000 SNP Detail

Summary

• ID
  rs6380000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106642858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACCACAC CCTCCAGCAG
  CAGCTGGCTA CCATGCGCTT TCTTGCCCAC AAATCAGAGG GTCCACTCCC TTCTGCAAAC
  CCTTCTCCTA TCCAGTCCTT CATCTCCCAC CCTCTGCCTC TATGCCTCAC TGCCGGCCTG
  GCCTACTGCA TTAGACTGTT TGCCACTGCC CACCCCCCAA ACCCCCCAAC CTTTACCCCC
  M
  CCCCCAGTCA CCAGAAGGCC TAGAGGGCAA CTAGAATGTT TTGATCACAA GCCGTCTAGC
  CCCAGTGTGA TCTTACCCTC CATGTGCCAC ACCCAGCCCC AAACCCCCAG TGACATGCAT
  TGATCCCTCC ATGCTGAGCC CTCACACTGA GGTCGGGGCT GCCACTCAGG GGGCTGTGAA
  GGAAAGACCT GGCTTCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8786153	WI_WGS_4_104502487	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6380000					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106642858 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1881 bp proximal
Rr596810	regulatory region 596810	1892 bp proximal