rs6379965 SNP Detail

Summary

• ID
  rs6379965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106642836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTCGGG AACAGTATTG
  AGATCACCAC ACCCTCCAGC AGCAGCTGGC TACCATGCGC TTTCTTGCCC ACAAATCAGA
  GGGTCCACTC CCTTCTGCAA ACCCTTCTCC TATCCAGTCC TTCATCTCCC ACCCTCTGCC
  TCTATGCCTC ACTGCCGGCC TGGCCTACTG CATTAGACTG TTTGCCACTG CCCACCCCCC
  M
  AACCCCCCAA CCTTTACCCC CCCCCCCAGT CACCAGAAGG CCTAGAGGGC AACTAGAATG
  TTTTGATCAC AAGCCGTCTA GCCCCAGTGT GATCTTACCC TCCATGTGCC ACACCCAGCC
  CCAAACCCCC AGTGACATGC ATTGATCCCT CCATGCTGAG CCCTCACACT GAGGTCGGGG
  CTGCCACTCA GGGGGCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8786118	WI_WGS_4_104502465	WI	MOUSE	f	SNP	A	C
ss321247213	CHEV_4_106458244	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6379965					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106642836 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1903 bp proximal
Rr596810	regulatory region 596810	1914 bp proximal