rs6379439 SNP Detail

Summary

• ID
  rs6379439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106642767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTCTGAA ACACGCTGGT
  CCACCCCCAA GGACGAAAAT GCTGGAAAGG CCTTTGTCTA TCTAGACAGA CTGCTCGGGA
  ACAGTATTGA GATCACCACA CCCTCCAGCA GCAGCTGGCT ACCATGCGCT TTCTTGCCCA
  CAAATCAGAG GGTCCACTCC CTTCTGCAAA CCCTTCTCCT ATCCAGTCCT TCATCTCCCA
  Y
  CCTCTGCCTC TATGCCTCAC TGCCGGCCTG GCCTACTGCA TTAGACTGTT TGCCACTGCC
  CACCCCCCAA ACCCCCCAAC CTTTACCCCC CCCCCCAGTC ACCAGAAGGC CTAGAGGGCA
  ACTAGAATGT TTTGATCACA AGCCGTCTAG CCCCAGTGTG ATCTTACCCT CCATGTGCCA
  CACCCAGCCC CAAACCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785590	WI_WGS_4_104502396	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379439					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106642767 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1972 bp proximal
Rr596810	regulatory region 596810	1983 bp proximal