rs6379298 SNP Detail

Summary

• ID
  rs6379298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC ATCAGGGCTT TGGGCCTTGC
  R
  GGAGGAAGCT TCCAGAAGGC TGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785449	WI_WGS_3_146877460	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6379298					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1055 bp proximal
Rr587007	regulatory region 587007	1738 bp distal
Rr587008	regulatory region 587008	191 bp distal
Rr587009	regulatory region 587009	396 bp distal
Rr587010	regulatory region 587010	861 bp proximal
Rr587011	regulatory region 587011	1167 bp proximal