rs6378797 SNP Detail

Summary

• ID
  rs6378797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:10008488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGAAA AACACTAGGG
  ACAGGATTGT CTGGATGGCT CTGGATTCGG GGGAGTTTCT TCTGGAAACC TGAGAGCTGT
  GGATGTGTTG AACTCTCTTC TTATGTCTGT ATAGAATGAC AGTCATAGAG CCACTGGACC
  AGGCAATGAC CACAGAAAAG AAGATTTCAG GGCACATCAC TAATGCTGCA TAAACTGAGT
  R
  ATTAATTTCA AAATGGTTAA CATAGGAGCA GTACTCAAAA TCTAGCTTCC TTGTCATGTT
  TTTGCTATTC CTTTTGAGAA ATATTTCCAG AAAGAAAATG AAATGTATAA AGATGGACAA
  AACCCAGAGA AGGAAAATGG AGAAGCCAAT ATACTTTGCA ACTTTGGCTT TTTGATCTTT
  ACAACAAGAT TCTCTGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8784948	WI_WGS_7_7041238	WI	MOUSE	f	SNP			G	A
ss46036286	mCV25388622	ABI	CRAMUS_MOUSE	r	SNP	C	T	C		C
ss148312509	ENSMUSSNP1019068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6378797					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:10008488 () rs orientation: forward

Symbol	Name	Function Class
Gm71895	predicted gene, 71895	within coordinates
Vmn1r66	vomeronasal 1 receptor 66	Coding-NonSynonymous