rs6378081 SNP Detail

Summary

• ID
  rs6378081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101119986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         cagcacttgg
  gaggcagagg caggcagatt tgtgagttca aggccagcct ggtcagccag gactgccagg
  gctacacaga gaaaccctgt cttgaaaaaa anatgtgtgt gtgtgtgtgt gtgtgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtAT ACATCTCAGA CAGTAAATCT AGCAGTGTAT
  CATCTCACTA AATTATACTA AGGATATAGA GAATATGTGT CCTCAGTGGG AAAAAAGAAA
  R
  CACAGAAAGT CTGGCAGCTA GAAAACACAG ATCCTGTCTG ACCTTTGCTC AGCTGTAAAT
  TGTTTTCGAT TAGTACAATT ATTTATAGTG TTCTCTGTAT AAAAATGAGT TTAAATCTAC
  ATATATTCTA CGTAGTTGCT TCATTTGTAT TTCTCTACAA ATATATGTGT TACTTAAATT
  ATTCAGAATA AACAGAATGA TGTCTTCAGA CAACATTAAA ATCTGTAGCT GGTAATGTGC
  TGTTGAAATC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8784232	WI_WGS_4_99029128	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6378081					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101119986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14497	CpG island 14497			1655 bp proximal
Jak1	Janus kinase 1			Intron
				Noncoding-Transcript-Variant
Rr596104	regulatory region 596104			1617 bp distal
Rr596105	regulatory region 596105			1465 bp proximal