rs6375297 SNP Detail

Summary

• ID
  rs6375297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136041296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATCTGC TCCCCAGAAC
  ACAACGGCTG CTTCTGTTAC TCAGCAATTG TACCTGCCGT AAACTCAAGT TCTTCTACCC
  CAGAGTACAT GAAGTTGCTT AAGGATCCGA TACTTCCATG TACATTTTCT ATAGTTTGAC
  AAGATTATTA CTGGAAATAT AGGTCAGATG CTCACAAAAG GCATAAAATA TTCTGGATAG
  K
  TATTAGCAGC ATGTGTACAA ATTAGTTGAG GTAAATCATG AATTGTCCTA CAATCTAGTT
  ATTTCTGGCT TAATGTAATA TAGCTCCTGA ATTTTTTCCA GCAGCATAAT AAAATGGCTA
  ATCAGGTGAA TGGTAATGCG GTACAGTTAA AAGAAGAGGA AGAACCAATG GATACTTCCA
  GTGTAACTCA CACAGAACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8781438	WI_WGS_4_133902239	WI	MOUSE	f	SNP								T		G
ss37777108	NES09154825	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		T		T	T	G	G	T	T	G	T
ss45638716	mCV22562739	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss147565170	ENSMUSSNP5281083	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6375297					SNP	G	G	T	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777108	NES09154825	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136041296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr367756	regulatory region 367756			1747 bp downstream
Rr602348	regulatory region 602348			1951 bp distal