rs6373928 SNP Detail

Summary

• ID
  rs6373928
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:4946330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCTCT GTAAACTCCC
  ATATAGACAT GTTCAGACCT GTGTCCCCTG GGTGATTCCA AATCTTGTCA AGTTGACAGT
  GAACGTTAAT TATCACATAG AGTCTCACTG TGGGTGTTTC CTAGGAGTCT TCTCGTATCC
  CAAAGCGTGT TCATCTTTCT GGTCCCCTGG GCTCTTTCTC CACTCTGTAC TTGTAGGCAT
  S
  TGTGTTCCCC GCATAGGCCA CCAGGTGGCG GCAGGGACCT CGCAAGAGTT GAGGAGGAGG
  GGCACTAGGG CCTGGTGAAA TCTGCCGGTG ACCCATGATG TCACGAAGAT CTTTGCCTTC
  CCATTGGTCT TCTCCTCAAG GGACTTTGCG GAATACGTAG ATAGGGCAAT AGGGCAGACT
  GACCTCTGAC CGATCTGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8780063	WI_WGS_7_4300381	WI	MOUSE	f	SNP							C		G
ss60963999	NES16160032	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G		C	C	C		G	C	C	G		G
ss322095618	CHEV_7_4894933	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6373928					SNP	C	C	C	C	C	C	C	G	G	C	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60963999	NES16160032	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4946330 () rs orientation: forward

Symbol	Name	Function Class
Rr400086	regulatory region 400086	within coordinates
Rr642087	regulatory region 642087	14 bp proximal
Ssc5d	scavenger receptor cysteine rich family, 5 domains	Intron
Tssr64379	transcription start site region 64379	509 bp upstream
Tssr64380	transcription start site region 64380	549 bp upstream
Tssr64381	transcription start site region 64381	665 bp upstream