rs6368777 SNP Detail

Summary

• ID
  rs6368777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68189730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTTCTTGATG
  TGAGTTATGG TGAAAttttt tgtttgtttg tttggttggt tggttggtgg ttggtttttg
  ggtttttgtt ttggttttgt tttttggttt tttttttttt tttttttgca tctacttttt
  ggccatttga atgtctcttt tttgtaaatg tcttttcagg AAATCTGTTT AAATTGTTTT
  GTTGGTCTGC TTTtctctct ctctgtctct ctgtctttct ctgtctctgt ctgtctctct
  R
  tctctgtctt tctgtctctc tttctgtgtc tctgtctctc tcccccaacc ccccatttct
  ctatccctct ccctgtctcc ctctccctct tcctctccct ctcCTGCTTT GTGGCTCTCA
  CTTTCCTCCG CTCTCTACAT TCCCTCTACT TGCCTTCTGG CACTCTCCCT CCCTCATGAA
  CAACTCAACT ACGTTTTGAC CCTATGTTTC TTCAGAAAGG AAAACAGGGC TATCTTGTGA
  ACAATGCCAT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8774894	WI_WGS_3_68882197	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6368777					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68189730 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	779 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	132 bp downstream