rs6368628 SNP Detail

Summary

• ID
  rs6368628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97886291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGAAAT TAGGGACCAC
  AGATCTACTA CAGCACCTGG CACATGCTAG CCACTCAGTA AATATGTCTT AAGAGAATGA
  ATGGTCAGAT CTGCCCAACA TTGAGAGGGT TCTTGCTTCA GATTAGAGAA TGGATTCTTG
  AGGATACCAA CATGAATAAA TGGATAGTAG ACAAGAGATG GTTTGAAGAC TCTCTGTCAT
  R
  GTGGTGAGAA CTGGGTTTGC CCTCACCTTG ATCACAGGAA TGGGGAAACA TGCAGAGTGC
  AACAGTGTAG ACTGGAAGCT GAATCAATGT GTGGACACAA GGGGTTAGAT AATTGTATAA
  AGCCAGAGTA AGGATGCCAC CAAAACATAG AAAGATGAAT ACTTTGGCTG TATTGGATCT
  GAGGCTACCT GAGAGATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8774745	WI_WGS_4_95762100	WI	MOUSE	f	SNP						A		G
ss38246031	NES09539103	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6368628					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38246031	NES09539103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97886291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68490	predicted gene, 68490			794 bp upstream
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595671	regulatory region 595671			805 bp distal
Rr595672	regulatory region 595672			458 bp distal