rs6367640 SNP Detail

Summary

• ID
  rs6367640
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104545632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC GCCCTCTGCA CCTCAGGGTC
  S
  GCCCTCAGGG CAGTTTTTTT TTCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8773756	WI_WGS_3_104745328	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6367640					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104545632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	within coordinates
Gm65697	predicted gene, 65697	within coordinates
Rr367518	regulatory region 367518	within coordinates
Rr582556	regulatory region 582556	within coordinates
Rr582557	regulatory region 582557	156 bp proximal
Rr582558	regulatory region 582558	251 bp proximal
Rr582559	regulatory region 582559	363 bp proximal
Rr582560	regulatory region 582560	898 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	352 bp upstream
Tssr31045	transcription start site region 31045	342 bp upstream
Tssr34883	transcription start site region 34883	755 bp upstream
Tssr34884	transcription start site region 34884	113 bp downstream
Tssr34885	transcription start site region 34885	216 bp downstream