rs6365939 SNP Detail

Summary

• ID
  rs6365939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143105250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TGGGTGTGAG CATCAGCTCT
  Y
  TTCTTACTGT GCAGCATGGG TCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8772052	WI_WGS_4_141154517	WI	MOUSE	f	SNP		T	C
ss147782183	ENSMUSSNP2678412	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C		C
ss321404585	CHEV_4_142968583	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6365939					SNP	T	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143105250 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	674 bp proximal