rs6365590 SNP Detail

Summary

• ID
  rs6365590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTAATGG AAATGTGGGA
  AAGAGATACG GTGTAGACAT TACCTAGCTA TTGCTGCTGA AAAGCAACAT GCAAGGGAGT
  CTTGGGGTCC GGGAAGGTGC CATGTGGCTC AATTGATAGA ACACTTTCCT AGTTTGAGCT
  CCAGATTGCA TAAAGTGGGC ACTTTGGTGT ATGCCTATAA TCCCAGCACT GAGGAAGGGG
  W
  GGTAAGAAGA TCCAAAGTCC AAGGTCCAGT GCTCAAGGCC ACCCTGATCC TAGAGTGGAT
  CTGCAAAGGA AGAGCAAGAG ACAGCACTCC AGTCAGAGTG AACAGCGCAT CAGAACCCAA
  AGGGTGCTGG CCTGGCGCTT TTTTTTTTTC CCCAAGATAG GATTTCTCTG TAGTTTTGGC
  TGTTCTGGAA CTTACTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8771700	WI_WGS_6_84910768	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6365590					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	950 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	273 bp distal
Rr632976	regulatory region 632976	386 bp distal
Rr632977	regulatory region 632977	926 bp proximal
Rr632978	regulatory region 632978	1038 bp proximal
Rr632979	regulatory region 632979	1974 bp proximal
Tssr1912	transcription start site region 1912	1399 bp upstream
Tssr57398	transcription start site region 57398	1351 bp upstream
Tssr57399	transcription start site region 57399	1369 bp upstream