rs6365063 SNP Detail

Summary

• ID
  rs6365063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93887781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGGCCA ACGCTGAGGC
  TCCGAGAGTT TGTGAGCAGA TTCGAGTGAG AGACTCCTAT ATCGTTTTCC CCAACTTGCC
  TCCCTTTGCT CTGGGAAACG ATGATACGGG CAGGAGGACA AGAAACTGGA TAAGCTCGGA
  CGCTGCCGTT AAGAGAAAAG GGATCATTTC AAAAGTGGCG GGTGGGCCTG AGTGTAACAT
  Y
  TCAGGATTTG AAAGCGCTAC AGCGGGCAAT TGTCACCGGG CCGCAGCTCT CCTGTGGACG
  CTGGTTTGTA GGAAATAGCG GCCTGCTGGA TGGACACTCT CCAGCGGGTG ACGGGCGGCT
  GGGTCAGGCA CCGCAGTGAA TCAGGTCTGG GGTCTGTGGC TGGGGCTGAG GGATTCTGAC
  ATTGTCAGAA AGCACCGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8771169	WI_WGS_16_94813458	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6365063					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93887781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	675 bp distal
Cpgi8494	CpG island 8494	within coordinates
Gm31175	predicted gene, 31175	1778 bp upstream
Gm60844	predicted gene, 60844	1820 bp upstream
Rr520042	regulatory region 520042	1981 bp distal
Rr520043	regulatory region 520043	1831 bp distal
Rr520044	regulatory region 520044	1330 bp distal
Rr520045	regulatory region 520045	within coordinates
Rr520046	regulatory region 520046	762 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1988 bp downstream
Tssr139540	transcription start site region 139540	1672 bp downstream