rs6365053 SNP Detail

Summary

• ID
  rs6365053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACATTTA TAGACAGCCC
  CATGCCATGT GCAGAACCCT GTTTCAGGTA CTACGAAGGT TACAGTAGCT AAGCAAAGCT
  CCCCTAGTTT CTTAGAGACT GCCCAATATT CTAATGGAAA TGTGGGAAAG AGATACGGTG
  TAGACATTAC CTAGCTATTG CTGCTGAAAA GCAACATGCA AGGGAGTCTT GGGGTCCGGG
  R
  AGGTGCCATG TGGCTCAATT GATAGAACAC TTTCCTAGTT TGAGCTCCAG ATTGCATAAA
  GTGGGCACTT TGGTGTATGC CTATAATCCC AGCACTGAGG AAGGGGTGGT AAGAAGATCC
  AAAGTCCAAG GTCCAGTGCT CAAGGCCACC CTGATCCTAG AGTGGATCTG CAAAGGAAGA
  GCAAGAGACA GCACTCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8771159	WI_WGS_6_84910661	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6365053					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	1057 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	166 bp distal
Rr632976	regulatory region 632976	279 bp distal
Rr632977	regulatory region 632977	1033 bp proximal
Rr632978	regulatory region 632978	1145 bp proximal
Tssr1912	transcription start site region 1912	1506 bp upstream
Tssr57398	transcription start site region 57398	1458 bp upstream
Tssr57399	transcription start site region 57399	1476 bp upstream