rs6365039 SNP Detail

Summary

• ID
  rs6365039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAGACA TTTATAGACA
  GCCCCATGCC ATGTGCAGAA CCCTGTTTCA GGTACTACGA AGGTTACAGT AGCTAAGCAA
  AGCTCCCCTA GTTTCTTAGA GACTGCCCAA TATTCTAATG GAAATGTGGG AAAGAGATAC
  GGTGTAGACA TTACCTAGCT ATTGCTGCTG AAAAGCAACA TGCAAGGGAG TCTTGGGGTC
  S
  GGGAAGGTGC CATGTGGCTC AATTGATAGA ACACTTTCCT AGTTTGAGCT CCAGATTGCA
  TAAAGTGGGC ACTTTGGTGT ATGCCTATAA TCCCAGCACT GAGGAAGGGG TGGTAAGAAG
  ATCCAAAGTC CAAGGTCCAG TGCTCAAGGC CACCCTGATC CTAGAGTGGA TCTGCAAAGG
  AAGAGCAAGA GACAGCACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8771145	WI_WGS_6_84910657	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6365039					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	1061 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	162 bp distal
Rr632976	regulatory region 632976	275 bp distal
Rr632977	regulatory region 632977	1037 bp proximal
Rr632978	regulatory region 632978	1149 bp proximal
Tssr1912	transcription start site region 1912	1510 bp upstream
Tssr57398	transcription start site region 57398	1462 bp upstream
Tssr57399	transcription start site region 57399	1480 bp upstream