rs6364655 SNP Detail

Summary

• ID
  rs6364655
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101119837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         gttggaaacg
  gaatctgggt cctctaaaga gttgccagtg ctattaacca ctgaaccatc tctccagcct
  cGtaaaaatt atttttttaa aaatGCTTTG TAAAAATACG CACATCTCGA caggcaatgg
  tggcacacgc ctttaatccc agcacttggg aggcagaggc aggcagattt gtgagttcaa
  ggccagcctg gtcagccagg actgccaggg ctacacagag aaaccctgtc ttgaaaaaaa
  W
  atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtATAC
  ATCTCAGACA GTAAATCTAG CAGTGTATCA TCTCACTAAA TTATACTAAG GATATAGAGA
  ATATGTGTCC TCAGTGGGAA AAAAGAAANC ACAGAAAGTC TGGCAGCTAG AAAACACAGA
  TCCTGTCTGA CCTTTGCTCA GCTGTAAATT GTTTTCGATT AGTACAATTA TTTATAGTGT
  TCTCTGTATA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8770759	WI_WGS_4_99028979	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6364655					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101119837 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14497	CpG island 14497			1804 bp proximal
Jak1	Janus kinase 1			Intron
				Noncoding-Transcript-Variant
Rr596104	regulatory region 596104			1468 bp distal
Rr596105	regulatory region 596105			1614 bp proximal