rs6364404 SNP Detail

Summary

• ID
  rs6364404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143105027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGAAACTGA
  TGTtggatgg atgggttgat aggtgggtgg gttggtgggt ggatgggtgg gtggAAAAGA
  GCTCCTTAAA GGCCTTTGCT ACCCCACAGT GCTTGTGGGC ACCTGTCTCC CAGCAGGTAC
  TTGCTGGGTA GTTATAGTCA TTAAGAGTAA TTTGTGTATC TGTCCCTTAG GGGAGAGGTT
  GGTGTGGGGG ACTTGAAGAT GGGCCCATTT CCTTCCCCGA GGAAAACCTG GGAAGGTATC
  K
  TGTGCCTCAG GAGTGTGTAA TTTGGATCCA GACTGGTATC CAGGCAAGGG CACAGAGAAC
  TAACGGAAGT GGTACNGCCC TGTCTAATGG AACACAGGga atgaatgagt gaatgcatga
  atgaTGTGAC CTACCTATGG TGTCCTCTCC TATAGCCTAC ACTGGGACAA GAGCAAAGGC
  TCTAGAGTTG GGATGCTCAC AGTGGGTGTG AGCATCAGCT CTNTTCTTAC TGTGCAGCAT
  GGGTCAAGTT                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8770507	WI_WGS_4_141154294	WI	MOUSE	f	SNP		T	G
ss147782162	ENSMUSSNP3522661	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6364404					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143105027 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	897 bp proximal