rs6364342 SNP Detail

Summary

• ID
  rs6364342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCGACAA GTGCAAAACC
  GATCTACACT CATTCTACCT TCTCGAACGT GACTAATGGA TCAGGAGTAC AAAGATTTTA
  CATGGCTGTT CCTCGCATCC CACCCCAAGC AACAAGACTC TCCTTTCTCT TCCAAGCTGG
  GATGACCAAT AGGTTGCTGA TGTCAAAGCG GTGGAGTGTA TGAGTTTCCC CTTTCCCTTT
  Y
  TTTGTTATTA GACATTTAAA AAATAATAAT ACCAGGAATA TGATGAATAC CGGAAACTTA
  CACCAGTCCA CAAACACCAC ATAGTCTGAC ACCTGGTGAT TAGGAACGCC CCAAGAATCA
  TCCACGTCTC GATTCTCCCA TTTCCAAAGA GTTTTTGCGA GGGTGGGGTA AGATTTTAAA
  CAACTACCCA CTCTTCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8770445	WI_WGS_6_13628837	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6364342					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839579 () rs orientation: forward

Symbol	Name	Function Class
Gpr85	G protein-coupled receptor 85	Intron
Rr626594	regulatory region 626594	1849 bp distal
Rr626595	regulatory region 626595	636 bp distal
Rr626596	regulatory region 626596	352 bp proximal
Tssr54956	transcription start site region 54956	879 bp downstream
Tssr54957	transcription start site region 54957	838 bp downstream
Tssr59842	transcription start site region 59842	1473 bp upstream
Tssr59843	transcription start site region 59843	1138 bp upstream
Tssr59844	transcription start site region 59844	962 bp upstream
Tssr59845	transcription start site region 59845	891 bp upstream
Tssr59846	transcription start site region 59846	370 bp upstream
Tssr59847	transcription start site region 59847	240 bp upstream
Tssr59848	transcription start site region 59848	142 bp upstream
Tssr59849	transcription start site region 59849	70 bp upstream
Tssr59850	transcription start site region 59850	46 bp upstream
Tssr59851	transcription start site region 59851	315 bp downstream
Tssr59852	transcription start site region 59852	336 bp downstream