rs6364327 SNP Detail

Summary

• ID
  rs6364327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTAAGT TCAGGCGACA
  AGTGCAAAAC CGATCTACAC TCATTCTACC TTCTCGAACG TGACTAATGG ATCAGGAGTA
  CAAAGATTTT ACATGGCTGT TCCTCGCATC CCACCCCAAG CAACAAGACT CTCCTTTCTC
  TTCCAAGCTG GGATGACCAA TAGGTTGCTG ATGTCAAAGC GGTGGAGTGT ATGAGTTTCC
  Y
  CTTTCCCTTT TTTTGTTATT AGACATTTAA AAAATAATAA TACCAGGAAT ATGATGAATA
  CCGGAAACTT ACACCAGTCC ACAAACACCA CATAGTCTGA CACCTGGTGA TTAGGAACGC
  CCCAAGAATC ATCCACGTCT CGATTCTCCC ATTTCCAAAG AGTTTTTGCG AGGGTGGGGT
  AAGATTTTAA ACAACTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8770430	WI_WGS_6_13628826	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6364327					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17167	CpG island 17167	389 bp distal
Gpr85	G protein-coupled receptor 85	Intron
Rr626594	regulatory region 626594	1838 bp distal
Rr626595	regulatory region 626595	625 bp distal
Rr626596	regulatory region 626596	363 bp proximal
Tssr54956	transcription start site region 54956	868 bp downstream
Tssr54957	transcription start site region 54957	827 bp downstream
Tssr59842	transcription start site region 59842	1462 bp upstream
Tssr59843	transcription start site region 59843	1127 bp upstream
Tssr59844	transcription start site region 59844	951 bp upstream
Tssr59845	transcription start site region 59845	880 bp upstream
Tssr59846	transcription start site region 59846	359 bp upstream
Tssr59847	transcription start site region 59847	229 bp upstream
Tssr59848	transcription start site region 59848	131 bp upstream
Tssr59849	transcription start site region 59849	59 bp upstream
Tssr59850	transcription start site region 59850	35 bp upstream
Tssr59851	transcription start site region 59851	326 bp downstream
Tssr59852	transcription start site region 59852	347 bp downstream