rs6361730 SNP Detail

Summary

• ID
  rs6361730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGAGC TTGAACTTAC
  AAAAGGATTT CTGTTGTCAT TTCTCTATAG GAAACTTCTG AAATAAAGTC CAGATTAAGT
  TTTTCTGTTC TTTCAAGGGT GCAGTTTCTG TCTTATAGGC TTCCCCATGC CCATAGCTGG
  GGAAGGGCAC ATCTCCTATC AGAAAGTTAT ATGCCTTACT TCTCCTTTAA CCTAGGTACC
  Y
  CCATGCACCC ATTGTCCAAC AATAGTTACT AAAATATGTG AGATCACTTA TTTTAAGTCT
  TCTTCTTCTT CTTCTTCTTT TTTTTTTTGA TTTTTCAAGA CAGGGTTTCT CTGGGTAGCC
  CTAGCTGTCC TGGAACTCAC TCTGTAGAAC AGGCTGGCCT CGAACTCAGA AATCTGCCTG
  CCTCTGCCTC CCGAGTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8767826	WI_WGS_3_19082015	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6361730					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402244 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	860 bp downstream
Rr397615	regulatory region 397615	1962 bp upstream
Rr573976	regulatory region 573976	165 bp proximal
Rr573977	regulatory region 573977	1809 bp proximal