rs6361016 SNP Detail

Summary

• ID
  rs6361016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131843445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACCCCC CGAAAAAGTA
  TGATCATATC CATTCTCTCC CTTCCTCCCT TCCTTTCTCC CTCCTCCCTT CCTCCCTTCC
  TCCCTCCCTT CTCCCCTCCC CCTCTCTGGT TGAGGTTTCC TTGCTAGTCC TAGAAAGATA
  ATAGCATTCT GTGGATGCTT CTCTTTTTAT CAAAGCACTC ACCAATACTT GGTAATAAAG
  R
  TTTGTTTAGG TACTAAAGCA AAGCAGGAGA TTTCCTGTGT AACTCATGAA TAACTTGGGA
  AATTCTGTTC CTGTGAACTG GTCCAGTTGT TTGTGCAGAG CTGAGGCTGT GGGTGAGGAG
  GAAAGGGAAT GGATGAAGGA AGCAGAGCAG AATCAGTCGC GAGTGGTCCT TGAAACAGTA
  CAGTGTTACT TCAGTGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8767111	WI_WGS_3_132619556	WI	MOUSE	f	SNP					A		G
ss46973601	NES10884356	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G		A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6361016					SNP	A	A	A	A	A	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46973601	NES10884356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131843445 () rs orientation: forward

Symbol	Name	Function Class
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585418	regulatory region 585418	263 bp proximal