rs6359954 SNP Detail

Summary

• ID
  rs6359954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131843255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTAATC AGAATGCTTG
  CCCTGTGCAG ATCAAGAGCT GTCATATACT TTATGGTAAA TTACTTTGAA CTTTAAAGGC
  AGACTAGTAT ACATTGGGTT CATGTGTACT GAGAATAGGA CCAGAGGAAA CAGGCTTAGG
  CTAGAGTGTG AGGGGGAATT TCCTGGCAGG GAGAGTTGCT AAGCCCAATG CATTACCCCC
  Y
  GAAAAAGTAT GATCATATCC ATTCTCTCCC TTCCTCCCTT CCTTTCTCCC TCCTCCCTTC
  CTCCCTTCCT CCCTCCCTTC TCCCCTCCCC CTCTCTGGTT GAGGTTTCCT TGCTAGTCCT
  AGAAAGATAA TAGCATTCTG TGGATGCTTC TCTTTTTATC AAAGCACTCA CCAATACTTG
  GTAATAAAGA TTTGTTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8766043	WI_WGS_3_132619366	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359954					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131843255 () rs orientation: forward

Symbol	Name	Function Class
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585418	regulatory region 585418	453 bp proximal