rs6359677 SNP Detail

Summary

• ID
  rs6359677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8631519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTGGAG CTCTTCCCTC
  TACTTCTGTT CCCCCCACCC TAACTCCCCC CAAACCATGA TTAGACAGCC AAAGTGTCTT
  CCAGATGAGA AGAGAATTTT CAAAGGAGCG CCTCATGCCA GTGATTTATA AATGAGCTGG
  GACTCTTTCC TATAAATCAT TCCACGTGAG CATCCACTTC ACTGGCTGAT AATCCATGCC
  Y
  CTCCTCCTTC CCAACAGGTG GCGACGTCAG AAGCTGGGAT AAATGTCTCT CTATTAGGGT
  ACCTCCTAGC AGGGAGCAGC TAGGAATGTG TTCGCCATGT GGCTGAAAAG TCTCAAAACT
  GGCAGGAGCG AAGACACAGA ATGGGATGGG AGTTACTTAA ATCGTCTTTG ATCCTTGCTC
  TAAATGACAC TGAACTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8765765	WI_WGS_6_8384924	WI	MOUSE	f	SNP			T	C
ss45874718	mCV24759403	ABI	CRAMUS_MOUSE	f	SNP	C	T	T		T
ss132972900	ENSMUSSNP3487909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6359677					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8631519 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			458 bp upstream
Rr626420	regulatory region 626420			7 bp proximal
Rr626421	regulatory region 626421			438 bp proximal