rs6358629 SNP Detail

Summary

• ID
  rs6358629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92813262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCGTCC CCCCTCCCCC
  TGCAATGTGG TTCTACCTAA CAAGAGCCAG CATTTAGAGA GAGCACTCTC ACTCAGTCTT
  GATACAGATC ACAAAGTATT TCCAGCATCA GATCAAAATG TGTTGAGCAT CTTGCATTTG
  GTTGTTTTAA AACTTGGCTT TTGAAATGAG ATACAGATGG CAACTGTGGG TGAATCACAG
  Y
  CACCGAGTCC CAGGACTTAA CATGTTTATG TGACAGAACT TTCAAGAGAA AGTTTACTGC
  ATCCAGCTAA GACTCAGGAC CCATCACCTC TAATGAGGTC CCCTCCCTTT ACAGTGGCGA
  CACTCAGTGG CTTGGCACAT TCTCGGAATT CTGCTGTGCT CATTCTTACG AAATACTGTC
  CTGTGTCACG TGGCCAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8764714	WI_WGS_2_93960641	WI	MOUSE	f	SNP							T		C
ss37600793	NES09096677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6358629					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600793	NES09096677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92813262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				Noncoding-Transcript-Variant
Rr561038	regulatory region 561038			within coordinates
Rr561039	regulatory region 561039			219 bp proximal