rs6358254 SNP Detail

Summary

• ID
  rs6358254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8631285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGCTATTTCA
  GAAATCAGAC TGAAGCAAGG TGCCTTCTGG TGTCTGCCGG AGGGTTCCCT TTAAGTCCCA
  CGGGCCAGGA GCCATCTGCG GTTTCTCCTT TCACCCTTCA AAGACGCAGG CCCACAGGAG
  GTCATACCCA GGCCCAGTCT CTCTACCATT ACAATCACTG CCTTTCCTAG CTCTTCCTGT
  CAAAGGCTAG GTccttcctt tccctttccc tttccccttc ccttctccct tcccttccct
  Y
  cccttcATGG GCTTGAAATC CCCCCCGTTC AGCCTCACTG GAGCTCTTCC CTCTACTTCT
  GTTCCCCCCA CCCTAACTCC CCCCAAACCA TGATTAGACA GCCAAAGTGT CTTCCAGATG
  AGAAGAGAAT TTTCAAAGGA GCGCCTCATG CCAGTGATTT ATAAATGAGC TGGGACTCTT
  TCCTATAAAT CATTCCACGT GAGCATCCAC TTCACTGGCT GATAATCCAT GCCNCTCCTC
  CTTCCCAACA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8764338	WI_WGS_6_8384690	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6358254					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8631285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			692 bp upstream
Rr626420	regulatory region 626420			241 bp proximal
Rr626421	regulatory region 626421			672 bp proximal