rs6357021 SNP Detail

Summary

• ID
  rs6357021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92812921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCAGCT CCAAGTTTCC
  AATTTAACAA GAGTCTAGGA TTGGTCCCAA ACCATCCAGT GTAATGGTCA GGAGGACCCA
  GAATGAATGT AGCTCCAAGT TTTTCTGTTC CAGACACATC TGGAAGGTAG AAATCCCATT
  CTTGTGTTCT CTGGGGAACC ACTGGTTCAC AGAACACCCA AGAGCACCTT CTCCCTTCTC
  Y
  CTTTCAGTTT CTGGCCAGCC ATTCAATATT AAATGCCAGA GAAAAGGGTA CATGGGGAAC
  AAGTCACTAT CACGATTTGC TGATTCAAAA CAGCAATGTC TGGAGTGGGT CTAACCATTT
  CAAATGGTTT GCAGGCATTT CCCTTCGTCC CCCCTCCCCC TGCAATGTGG TTCTACCTAA
  CAAGAGCCAG CATTTAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8763102	WI_WGS_2_93960300	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6357021					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92812921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				Noncoding-Transcript-Variant
Rr561038	regulatory region 561038			336 bp proximal
Rr561039	regulatory region 561039			560 bp proximal