rs6354996 SNP Detail

Summary

• ID
  rs6354996
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21709982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAAAG GGAAAAATTA
  TGTGAAGAAG CAGAACTTTA TTCCAGACAA TTCACCATAG AGGGTCCACA TTTACCCCAC
  TGAGCTTTAT TCATGAATTC CCTGAACGTC TATTTTCTTT CACTAAAGAC CTCTAGTTGT
  GAAAGAGAAC CATCTAGTTT CCCCTTTGTC ATAGAGGCTG AATGTGTTAG TTTTCTGAAC
  K
  ATAAAAAGAT TCTAAAATAT ACTTTTAAAA GAATAATAGT TCATAGATTG GCTGAAACAA
  AAGATAGCAC ACAATTCTTG AAATAATGTA TGTGAAATTC TCAAACTATG TAAGAGAAGG
  GGATTGACTC TTTGGGCAAA ATAGGCGAGA ACAAAGTCAT TGCTGCTCTT AGGCAAACAT
  TGATTTCAAA ATGTCAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761068	WI_WGS_6_21651221	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354996					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21709982 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	405 bp distal
Rr627001	regulatory region 627001	501 bp distal