rs6354985 SNP Detail

Summary

• ID
  rs6354985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21709975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTCTC AGGAAAGGGA
  AAAATTATGT GAAGAAGCAG AACTTTATTC CAGACAATTC ACCATAGAGG GTCCACATTT
  ACCCCACTGA GCTTTATTCA TGAATTCCCT GAACGTCTAT TTTCTTTCAC TAAAGACCTC
  TAGTTGTGAA AGAGAACCAT CTAGTTTCCC CTTTGTCATA GAGGCTGAAT GTGTTAGTTT
  Y
  CTGAACGATA AAAAGATTCT AAAATATACT TTTAAAAGAA TAATAGTTCA TAGATTGGCT
  GAAACAAAAG ATAGCACACA ATTCTTGAAA TAATGTATGT GAAATTCTCA AACTATGTAA
  GAGAAGGGGA TTGACTCTTT GGGCAAAATA GGCGAGAACA AAGTCATTGC TGCTCTTAGG
  CAAACATTGA TTTCAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8761056	WI_WGS_6_21651214	WI	MOUSE	f	SNP							T		C
ss47828360	NES11694530	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C		T	T	T
ss133070079	ENSMUSSNP2706867	ENSEMBL	ENSEMBL_Sanger	f	SNP		T												C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6354985					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828360	NES11694530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21709975 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	398 bp distal
Rr627001	regulatory region 627001	494 bp distal