rs6354984 SNP Detail

Summary

• ID
  rs6354984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149241417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT CCTATTCCTG CCCAGTGAGT
  Y
  GAGTTTCCCA GGTCAGGAAG TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761055	WI_WGS_4_144541848	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354984					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149241417 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr377402	regulatory region 377402	within coordinates
Rr604846	regulatory region 604846	1908 bp distal
Rr604847	regulatory region 604847	1516 bp distal
Rr604848	regulatory region 604848	828 bp distal
Rr604849	regulatory region 604849	517 bp proximal
Tssr44630	transcription start site region 44630	1103 bp downstream