rs6354951 SNP Detail

Summary

• ID
  rs6354951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149241391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA ACCCTCCTCC TAGTGGCCTG
  R
  AGACTCCTAT TCCTGCCCAG TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8761022	WI_WGS_4_144541822	WI	MOUSE	f	SNP								A	G
ss45606414	mCV22641316	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss46700532	NES10944768	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G			G	G	A		G	G	A	G		A
ss148029181	ENSMUSSNP2121325	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321425106	CHEV_4_148531043	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6354951					SNP	A	A	A	G	A	A	G	A	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46700532	NES10944768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149241391 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr377402	regulatory region 377402	within coordinates
Rr604846	regulatory region 604846	1882 bp distal
Rr604847	regulatory region 604847	1490 bp distal
Rr604848	regulatory region 604848	802 bp distal
Rr604849	regulatory region 604849	543 bp proximal
Tssr44630	transcription start site region 44630	1129 bp downstream