rs6354837 SNP Detail

Summary

• ID
  rs6354837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68189430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGGTTCC TATAATTGTC TATTTTATCT ACTGCTTCCT
  TCAATGGCTG AAACAGCTTC TGTCCATACC CTCAGTACAC CCTGTACTTG TTTGACTATA
  S
  TCTTTGTGTC TAGGATGAGA CCACATCTCA TTTTGGTTTG AAATTGCATC TTCTTGATGT
  GAGTTATGGT GAAATTTTTT GTTTGTTTGT TTGGTTGGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8760908	WI_WGS_3_68881897	WI	MOUSE	f	SNP		C	G
ss45393052	mCV24617332	ABI	CRAMUS_MOUSE	f	SNP	G	C		G
ss135262164	ENSMUSSNP4044570	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320791288	CHEV_3_68086019	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6354837					SNP	G	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68189430 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	1079 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	166 bp upstream