rs6352417 SNP Detail

Summary

• ID
  rs6352417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86987815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAAGAC TGAAGTAGAA
  GACAGTTTCT CTGCCTCTCC CAGTCTGTAT GTGCTGCCGC AGACCGCATC CATGACCGAG
  CCCTACCGTG ATCACAGCAG CCTACTGAAT CTAAGATGAG AGCAACACCA ATAACTTCAT
  TTCACTCAGG GGTAGGGTGA CAGACAAGAT CAAGAAGTTG GTGGTTAAAG CTCCTTCTAG
  Y
  AGGCTGTGCC TCCCTGCCCC AAGCCTCACC GAGACTGCTC ACTGTTCCCG AGGAATGGGC
  AATCTCCTGC CCCAGATGAA CACAGCCAAC AGAGAATAGG TTTAGGGAAA GACCAGAAGA
  TGGAAGCACG GAAAATAAGG AGGTCAGACC AGGGTTACTC AGCAAACAGC AGCCGCAGAA
  TGGGATCCTG GATCTCTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8758481	WI_WGS_3_87866573	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6352417					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86987815 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579434	regulatory region 579434	1810 bp proximal
Rr579435	regulatory region 579435	1895 bp proximal