rs6351140 SNP Detail

Summary

• ID
  rs6351140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152370018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAACCGC CTGCTCCCCA
  AGTCTCTCTA CATCTAGAGC CTGAAGCCTA GGCCAGTACG TTCCCTTGGA CTTGCCATGT
  CTCCAAGCAG ATGGTGCAGT CTCACCTGGC CATCGAGACA GACCTGAGTC CTCAACTGTA
  GGAAGCAGCA TGTGGGCCCC AAAGCCCATG GTCCTTTGTC ACAGGTGGCA CCTGTGATAA
  R
  GGCTAGGATT CGACCCCCTC TGTGAACTTG ATTCAGGACT AGGACTGGGT GTGTGCCCTG
  TGAGATCCTT GACCTTCCCA CACATTCTGA TGCCCCTGAA ATTCACCGGT GGCTCTGTCT
  GGTCCTCGCT GAGAGGCCGC CACCTGGCGG TAGCAGAGAA AAAAAATCTT GGCGTTTTTC
  CCACCTGGGT AGCTGACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8757199	WI_WGS_4_147694163	WI	MOUSE	f	SNP				A	G
ss45569337	mCV23461104	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A		A
ss148080321	ENSMUSSNP4330590	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			A
ss321434068	CHEV_4_151659670	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6351140					SNP	G	G	A	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152370018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15403	CpG island 15403	1489 bp distal
Cpgi15404	CpG island 15404	537 bp proximal
Gpr153	G protein-coupled receptor 153	224 bp downstream
Hes3	hes family bHLH transcription factor 3	mRNA-UTR
Rr605826	regulatory region 605826	1550 bp distal
Rr605827	regulatory region 605827	134 bp proximal