rs6351093 SNP Detail

Summary

• ID
  rs6351093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152369991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAACAGCGTT
  TCTTTTCTGT ACAGGACCCA ATAAAAAATT CCTCATGGTT TGCACACATC CTTCTGAGGC
  TGGTTTCATG GAACCGCCTG CTCCCCAAGT CTCTCTACAT CTAGAGCCTG AAGCCTAGGC
  CAGTACGTTC CCTTGGACTT GCCATGTCTC CAAGCAGATG GTGCAGTCTC ACCTGGCCAT
  CGAGACAGAC CTGAGTCCNC AACTGTAGGA AGCAGCATGT GGGCCCCAAA GCCCATGGTC
  Y
  TTTGTCACAG GTGGCACCTG TGATAANGGC TAGGATTCGA CCCCCTCTGT GAACTTGATT
  CAGGACTAGG ACTGGGTGTG TGCCCTGTGA GATCCTTGAC CTTCCCACAC ATTCTGATGC
  CCCTGAAATT CACCGGTGGC TCTGTCTGGT CCTCGCTGAG AGGCCGCCAC CTGGCGGTAG
  CAGAGAAAAA AAATCTTGGC GTTTTTCCCA CCTGGGTAGC TGACCAGAGG CCACTTTGAG
  ATGGCCATAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8757152	WI_WGS_4_147694136	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6351093					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152369991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15403	CpG island 15403	1462 bp distal
Cpgi15404	CpG island 15404	564 bp proximal
Gpr153	G protein-coupled receptor 153	197 bp downstream
Hes3	hes family bHLH transcription factor 3	mRNA-UTR
Rr605826	regulatory region 605826	1523 bp distal
Rr605827	regulatory region 605827	161 bp proximal