rs6350656 SNP Detail

Summary

• ID
  rs6350656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152369949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTCT GTACAGGACC
  CAATAAAAAA TTCCTCATGG TTTGCACACA TCCTTCTGAG GCTGGTTTCA TGGAACCGCC
  TGCTCCCCAA GTCTCTCTAC ATCTAGAGCC TGAAGCCTAG GCCAGTACGT TCCCTTGGAC
  TTGCCATGTC TCCAAGCAGA TGGTGCAGTC TCACCTGGCC ATCGAGACAG ACCTGAGTCC
  W
  CAACTGTAGG AAGCAGCATG TGGGCCCCAA AGCCCATGGT CCTTTGTCAC AGGTGGCACC
  TGTGATAAAG GCTAGGATTC GACCCCCTCT GTGAACTTGA TTCAGGACTA GGACTGGGTG
  TGTGCCCTGT GAGATCCTTG ACCTTCCCAC ACATTCTGAT GCCCCTGAAA TTCACCGGTG
  GCTCTGTCTG GTCCTCGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8756715	WI_WGS_4_147694094	WI	MOUSE	f	SNP				T	A
ss45727151	mCV23461103	ABI	CRAMUS_MOUSE	f	SNP	A		T	T		T
ss148080318	ENSMUSSNP4781536	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T			T
ss321434067	CHEV_4_151659601	CHEVERUD	SCREENING_POP	f	SNP							A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6350656					SNP	A	A	T	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152369949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15403	CpG island 15403	1420 bp distal
Cpgi15404	CpG island 15404	606 bp proximal
Gpr153	G protein-coupled receptor 153	155 bp downstream
Hes3	hes family bHLH transcription factor 3	mRNA-UTR
Rr605826	regulatory region 605826	1481 bp distal
Rr605827	regulatory region 605827	203 bp proximal