rs6349643 SNP Detail

Summary

• ID
  rs6349643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84198213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCAGCAT GTCACAAAAA GAGAAAATTA AACACTTGAC
  TGACAATGGT ATCCCTGCCT GCACAGCGTA CTAGTGCAAG GTGGCATGAA GACTGTGGGC
  R
  TAACCAACCA ATATCTGATT TGACCTAAGG CCCACTCCAT GAGGTGCAGC CCATATATGA
  CATTGCACAA ATGACCAAGA ACCTGAGAGT AGATAGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8755701	WI_WGS_2_85256553	WI	MOUSE	f	SNP			G	A
ss45349076	mCV23284093	ABI	CRAMUS_MOUSE	f	SNP	G	A	G		A
ss146829652	ENSMUSSNP3906060	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
ss320371132	CHEV_2_84208026	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6349643					SNP	G	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84198213 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560240	regulatory region 560240	803 bp distal
Rr560241	regulatory region 560241	1421 bp proximal