rs6349569 SNP Detail

Summary

• ID
  rs6349569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84198163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTACAGAGA ACCTTCATCC CTATGTTCTG GGATCTTTGG
  CATAGGAAAG CATTCAGCAT GTCACAAAAA GAGAAAATTA AACACTTGAC TGACAATGGT
  R
  TCCCTGCCTG CACAGCGTAC TAGTGCAAGG TGGCATGAAG ACTGTGGGCG TAACCAACCA
  ATATCTGATT TGACCTAAGG CCCACTCCAT GAGGTGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8755627	WI_WGS_2_85256503	WI	MOUSE	f	SNP			A	G
ss45316285	mCV23284092	ABI	CRAMUS_MOUSE	f	SNP	A	G	A		G
ss146829646	ENSMUSSNP5902575	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss320371131	CHEV_2_84207976	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6349569					SNP	A	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84198163 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560240	regulatory region 560240	753 bp distal
Rr560241	regulatory region 560241	1471 bp proximal