rs6348615 SNP Detail

Summary

• ID
  rs6348615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101422579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAATTC CCAACAACTA
  CATGAAGGCT CACAACCATC TGTACAGCTA CAGTGTACTC ATATACATAA AATAAATAAA
  TAAATCTTAA AAAAAAAAAA GCTGATGGTG ACCCGGAAAC AGAAACAGGA AGAGGCCACG
  CTCTCAGCAT CTCTCTGAGA ACACACCCCA GTGATTTATC TACACTCGTT CTACCTCCCA
  M
  AGGTTCTACC ATGTCCCAAT AGTGTCCCAA GCTGAGGACC AAGGTTTCAA CATACCGTTC
  TGGGTACTTA TCTCAGCTGT TCTGCAAAGC TCTGTGTCGA TCTAAGACCT GTGAGCTTAG
  ATCGAAACAG TGATTTGCCA GACTCAGAAG AGAACTTCAG TGTCGTGGCC TCGACTCAAT
  GGATCATCTT TTACTGGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8754670	WI_WGS_3_101624458	WI	MOUSE	f	SNP			A	C
ss45383281	mCV23083592	ABI	CRAMUS_MOUSE	f	SNP	A	C	A		A
ss135548057	ENSMUSSNP6242842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C			A
ss320852401	CHEV_3_101319186	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6348615					SNP	A	C	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101422579 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Rr582065	regulatory region 582065	687 bp distal
Rr582066	regulatory region 582066	1149 bp proximal
Rr582067	regulatory region 582067	1812 bp proximal