rs6348161 SNP Detail

Summary

• ID
  rs6348161
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19401960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTAGCT GGCACTTGAA
  TAGATGGTAT AATACCACTT ATTTTTATTT CATGCTGATA TCTCTACCAA CCTTTTAAGA
  ATATAATTGA TCACTTATGA AGTCTTACAA ATCCAATTTT ATTGATGGCT CTCTTGAGCC
  TGGCATTAAA GCCCATGTGG CCTCTATGGT AGGTGGTTGT TGCTGGGGAC AGAGTCTGCT
  K
  TTTTCTTTCT GAGCTGCTCA GCAAAGGTTC CTTCTGGGGA CACTATGGGT GAGTAGGCTT
  GGCAGGTTCT CTTGAACCCT CTCTTCTCAG AGCTTGAACT TACAAAAGGA TTTCTGTTGT
  CATTTCTCTA TAGGAAACTT CTGAAATAAA GTCCAGATTA AGTTTTTCTG TTCTTTCAAG
  GGTGCAGTTT CTGTCTTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8754215	WI_WGS_3_19081731	WI	MOUSE	f	SNP							T		G
ss46825072	NES10846316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G		T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6348161					SNP	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825072	NES10846316	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19401960 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	1144 bp downstream
Rr573976	regulatory region 573976	449 bp proximal