rs6346985 SNP Detail

Summary

• ID
  rs6346985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103867073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGCACTTTAT
  AAATAAATAT GCACATGACA TTTCCCTCCT TCCACAGNTC TCNCTAGTGG GNGGCATTAG
  CTCATTGTTT TGGAGAACAA GGTCAGACAG ATGCAATCAC ACACACACAC ACAAATACAC
  ATATTgaggg agggagggag ggagagagAG TGAGTgtgag tgagtgagtg agtgagtgag
  tgagtgTGAG TTCACTCTCC ACAGTAAGTA GTAGGGCTAA GGTAAGGACC AGTCTGGCTT
  R
  CTATAATATA TTGTCTCTTC TAATCTTAAT TTTACTNAAA TGTAAATATA TATTCCCTTA
  TATCTTTCTG TTAGCTAGGG GTGTTTTTAC TTCTTAATCT TACATATTAA GTAGTCTAAC
  ATGTAGCACA TAGCATACAA ATGTTAGCCT CTTTCCTTAT CTACCATACT CCTCCTGGCT
  TTTATTCAGC TTGGTTTCTT TTCTATCAAA CTCTTTATTT TTTACCTTTT CTTTTATATG
  TGTATGCAGA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8753038	WI_WGS_2_104915577	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6346985					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103867073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1465 bp distal
Rr562011	regulatory region 562011			1688 bp distal
Rr562012	regulatory region 562012			778 bp distal
Rr562013	regulatory region 562013			183 bp distal