rs6346633 SNP Detail

Summary

• ID
  rs6346633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151766725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTACTGGACG
  ATTCTTTTCA TTATACCTGA GACAGTCTGC TTAATGTTCT GACATGGGGG AGGGGCATAT
  ATTTTTAATT TAGATCCTTC CAGAAGGTAT AGAAAAATAA AGTACAAACA CAAATCACTT
  GACAATTTTA TGATTCAAAC CAACAAATGG AAAACAGACA GTTTTGAGTG TTGCTAACAC
  AGTCAGGCAT TTCATGCCAA CCCAGTCATC CATCCCATTT CTTGGACCTA TTTCTAGAGG
  Y
  GACCAAACGT GCGTCTGAAG ATAGAATCAC TTCGTTTTAC AGCAAAGTAT CCGAGAGGAA
  CATGGGCNAG AGAATGGTGG AAAACCGCTG TTTCCTAAAC AGCACTTAGG GGCTCATTAA
  CACTCAAAAG TGAGGTTCCC GAGAGACATG AGTGACATCC AAGGTGCTAC CTGTGACCGA
  GGGAAAGGAC ATGGGTGTCT CATCTTCGGG TACAGGGAGC TGGTCTTCTG GAAAGACACT
  GTCTTAGACA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8752685	WI_WGS_1_152810058	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6346633					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151766725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
D1Mit513	DNA Segment, Chr 1, Massachusetts Institute of Technology 513			852 bp proximal
Rr420379	regulatory region 420379			234 bp distal
Rr420380	regulatory region 420380			189 bp proximal