rs6345790 SNP Detail

Summary

• ID
  rs6345790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103866870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTCACA TCAAAGAAAA
  GATACAAAGA GAGTTTAATA ATTAGTAAGC AGCAGAGATA AACCCAGTCT TGGCTTCTGA
  TAAATCGTCA CAGCTTCCTC TCTGAGTAGC TGAGGGGAGA AGAGAGTAGG TGAGTATTTA
  CTGAAAGCAG TAAGGCACTT TATAAATAAA TATGCACATG ACATTTCCCT CCTTCCACAG
  Y
  TCTCGCTAGT GGGCGGCATT AGCTCATTGT TTTGGAGAAC AAGGTCAGAC AGATGCAATC
  ACACACACAC ACACAAATAC ACATATTGAG GGAGGGAGGG AGGGAGAGAG AGTGAGTGTG
  AGTGAGTGAG TGAGTGAGTG AGTGAGTGTG AGTTCACTCT CCACAGTAAG TAGTAGGGCT
  AAGGTAAGGA CCAGTCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8751841	WI_WGS_2_104915374	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345790					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103866870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1262 bp distal
Rr562011	regulatory region 562011			1485 bp distal
Rr562012	regulatory region 562012			575 bp distal
Rr562013	regulatory region 562013			within coordinates