rs6345523 SNP Detail

Summary

• ID
  rs6345523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131842796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTTGTT AAAACTTTGC
  AAGTGGATGT TTTAGTTTTT GCTCAGCAAA CTTAATGATA TGTACCTTGC ATGGTCACTT
  TGAATATTAA ATGAAATAGT GAATAGAAAT ACCTGATGTC ATGTCTACAT CTAGTACACG
  GTTACATTCT GTCACCCTCC AATGCTGTAT CTCATCTCAA TCCATGCATG GAGATGTCAA
  Y
  GACAGCAAAA TTAGAGTTAT GTAAATTCTA AAGTCTGAAA GACTGACAGT AATTCACATC
  ACAGAACAGC GTCATGTGAA TCTGCAAGTA CAGAAAAAAA GACTACTGTT GTAAGACATG
  TGCATTTATA CTCTAATTTT AATATTTACA CGAATAGCAA TCCTAGCTGG CAAATACCAT
  TACAAGCATT TTGCAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8751574	WI_WGS_3_132618907	WI	MOUSE	f	SNP							T		C
ss46973595	NES10884409	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6345523					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46973595	NES10884409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131842796 () rs orientation: forward

Symbol	Name	Function Class
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585418	regulatory region 585418	912 bp proximal