rs6345028 SNP Detail

Summary

• ID
  rs6345028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118013580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACATG TGGCCCAGAC
  CAGATGGTAT AGGTATTGCC TGGATGGGAC AAAGACCCTG AAGAACTAGA AGTCCCTTTG
  TCCTATCTAA TGTGGCTGTA AAGGAAAGAA CAAGAAGGTA GTAGAGTCAC TAGCAAGTAC
  CCTCAAATGA GTGCCAGGTA GGTCCATGCT GTCATTAACT CTCATGTGAC AAAGGGCACA
  Y
  TGGAGCTGTT CCACATCCAG ACTCGCCTGG CTTAATAAAC AAAGCCAAGA GTCAGACCTG
  GTTCTGCCTA GTCCCCACTA TGCCATATGC ATGTCACTGT GAGCAGACAC TGTGGGATGC
  TCCAGGATGC TCCAACATGC AGGTGAACCG GGAACTCCCC GGCCTCCTCC CATTGGCTGT
  GGGTCAAGGG GTGGGGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8751076	WI_WGS_5_115872411	WI	MOUSE	f	SNP							C		T
ss51190899	NES13825870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6345028					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51190899	NES13825870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118013580 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Nos1	nitric oxide synthase 1, neuronal	Intron
Rr618744	regulatory region 618744	1403 bp distal