rs6343960 SNP Detail

Summary

• ID
  rs6343960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103866513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGCCACAGT
  CCTCATTCAG CTTTAAGGTT ATGTAGGTGT CAGGTTCAAG AGGAAGTTAG CAGCAGATAG
  GTGGTAGACT TGGGGTAAGG GTCATGGAGC ATCCTGAGGT TAATTGTGTA TTTTCAAATC
  ATATTTTCCT TGTATATTGG CTTAGAATTG AGCTGGGAGT TTAGTAATCC TTTAAAGGAG
  CAGACTGTAA ATATTTTAGA GTTGGTAGAA CTGACCCATA GTTTCTGTGA CAGAGACCTG
  W
  GTTTAACTCT GCTGTTAGTT AGTCTGTTGT TTCTGGGGAA CAGCCTTAGA CAATACAGAA
  ACAAAAGGGA GTGGAAAAGG GAGTGGCTGG GTTCCAATAA GAAGGATTTA GCCTCTCAGC
  TATTATTTAC CAAACCCTGA TTAATTACTA GTACCTTCAC TTCACATCAA AGAAAAGATA
  CAAAGAGAGT TTAATAATTA GTAAGCAGCA GAGATAAACC CAGTCTTGGC TTCTGATAAA
  TCGTCACAGC                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8750003	WI_WGS_2_104915017	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343960					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103866513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			905 bp distal
Rr562011	regulatory region 562011			1128 bp distal
Rr562012	regulatory region 562012			218 bp distal
Rr562013	regulatory region 562013			356 bp proximal